Open notebook science
Inspired by a recent blogpost on open notebook science, I've spent the weekend coding. I've setup a site (Social Notebook) with the idea of trying to remove the risks from open notebook science. Basically the site uses a social network model. The method behind this madness is that it requires users to logon, and since it uses an invitation only registration system, accounts are associated with peoples real identities, rather than pseudonyms. This allows user tracking, so you know who reads what. My hope is that by making it very easy everyone (even if not logged in) to see who has read what, it will remove the motivation to steal someones idea without credit, since anyone can see that you did. Clicking on the Knowledge Propagation Graph (http://elgg.jfitzsimons.org/demos.html) link at the bottom of any page leads to a directed graph of how ideas have propogated.
At the moment it's a little primitive. I'll add in page resolution to the graph over the coming week and dates, and I'll try to add latex support tonight.
Each user has their own mini-wiki and can restrick access to any information using groups. You can define your own groups or use one of the four built-in groups: public, friends, logged-in users or private. I'll try to come up with an embargo script which can automatically change these based on date based on Dave Bacon's idea.
I'm hoping that a few people will try the current beta version and let me know where it can be improved. There is no pressure to put up work. If you just want to be able to participate, play around with the system and look at other people's notebooks that's fine. Just drop me an email, or leave a comment here. The only requirement is that you sign up with your real name, so if you want to join please use an institutional email address.
Update: If you want a login for the beta site, you could just leave a comment here. As long as you fill in the email address field with a reasonable address, I'll mail you an invitation.


12 Comments:
I created an account and copied one of the experiments from our wiki. It looks like it keeps track of versions ok and should be usable as a lab notebook.
The one issue I have is that there is no mechanism to access the notebook pages without a login. This means that the notebook will not be indexed by search engines and will not be discovered by researchers who don't already know about your site. I don't think a notebook can truly be called Open if it is not freely indexable and accessible by a simple url.
Perhaps the term "Shared Notebook Science" would be more appropriate for what you are trying to accomplish.
Hi Joe
Interesting idea, although as you might expect, along with Jean-Claude I'm not convinced that closing things up is the most effective way to be open. Conceptually though explicitly recording who has seen what is still an interesting route to explore though and if this is a route into full ONS that people feel more comfortable with then that can't be a bad thing.
I'm also really interested in your graph of idea propagation as it has a close connection to some things we are trying to represent in our blog based notebooks (see e.g. here and here for a different representation. We've been very interested in network representations of the connections in the system.
I'm based at RAL near Didcot so if you want to drop me a line then I'd be interested in meeting up to talk about this.
Hi Jean-Claude,
You should be able to make any of your pages publically accessible. It defaults to logged in, since that is necessary for the user tracking to be workable, but you can edit the privacy settings on any of your pages to allow the public (and google) to see them.
If this isn't working, then it's a bug, and I'll look into it.
Hi Cameron,
As with my reply to Jean-Claude, the intention is to allow users to choose the level of access granted to the public. It defaults to logged-in users, but you can specify material to be accessed only by individual users, or custom groups, or indeed the public at large.
If the public access is acting up, please let me know. If it is, then it is a bug, not a feature.
Joe,
I thought I had set up this page to public but it is asking for login info.
Thanks for pointing out the bug. It's fixed now. The public option should now work as advertised.
See, I really do need beta users.
Just to point out that users who are not logged in will show up as "Logged out" in the Knowledge Propogations Graph, with user id -1.
Latex support is patchy at the moment, but I hope to get it working this evening.
Cameron,
Forgot about the last part of you post. I'd definitely be interested in meeting up and having a chat. Bare in mind though that the site was produced by a bored physicist, so I'm not claiming to have any real expertise in the area.
Hey Joe, bored is good, that means I can utilise your spare time :)
I think its great that you're testing these ideas out. There are many aspects to this - one is how open do you need to be to get the kind of results that the extremists amongst us believe are possible. The second is how do you persuade people to work their way along the continuum from closed towards more open and ideas like yours are a good way forward on this. The discussion around this can be as important as the implementation.
Drop me an email (C.Neylon with the rest being the standard RAL address) and we can organise to meet up sometime. Are you involved in the Open Knowledge Foundation Oxford group at all?
I'm not involved in the Open Knowledge Foundation and frankly didn't know such a beast existed. As I say, I'm just a bored physicist and so have nothing to do with this type of thing at a professional level.
Looks interesting ... I've been following the FriendFeed discussion, but came in late ... everything I would have said has been said already :). I like the idea that this style of electronic notebook could be the 'gateway drug' (for want of a better term) for some people to adopt Open Notebook Science. Could I have an invite for the beta ?
Hi Joe,
I learned of the beta through Ian Durham. It's a forward-thinking idea; I'd like to try it out. I'm currently maintaining my research log at cohærence*.
Thanks in advance,
C*
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